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Species belonging to selected taxon:

Euphorbia esula, Hevea brasiliensis, Jatropha curcas, Linum usitatissimum, Manihot esculenta, Populus deltoides, Populus euphratica, Populus nigra, Populus tremula, Populus tremula x Populus alba, Populus tremula x Populus tremuloides, Populus tremuloides, Populus trichocarpa x Populus nigra, Populus x canadensis, Bruguiera gymnorhiza, Populus trichocarpa, Ricinus communis, Populus trichocarpa x Populus deltoides



ABOUT THIS RECORD

ID: MNEST051632
species: Populus trichocarpa
miRNA family: MIR166
source: PMRD, original name: ptc-miR166h

Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TCGGACCAGGCTTCATTCCCC

miRNA*
GGAATGCTGTCTGATTCGAGA

mismatches: 3
bulges: 0

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pre-miRNA
ACACAGTTGAGGGGAATGCTGTCTGATTCGAGACCATTCACTTTAAGCACACATTCATCTTTCGAATGATCTCGGACCAGGCTTCATTCCCCCCAACTCA
A


dot-bracket secondary structure
....(((((.((((((((..(((((.(((((((.(((((........................))))).))))))).)))))..)))))))).)))))..
.



SIMILARITIES
miRBase ptc-MIR166h: 1e-52

PMRD ptc-miR166g: 7e-33

microPC miR166: 0.00000008
UniProt no hits

RFAM mir-166: 6e-46

Identical with: ptc-MIR166h from miRBase (MNEST041329)

MORE

miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
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references

[1] Dezulian T, Palatnik JF, Huson DH, Weigel D, http://genomebiology.com/2005/6/11/p13 (2005)., "Conservation and divergence of microRNA families in plants"
[2] Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm, Science. 313:1596-1604(2006)., "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)"




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