miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Euphorbia esula, Hevea brasiliensis, Jatropha curcas, Linum usitatissimum, Manihot esculenta, Populus deltoides, Populus euphratica, Populus nigra, Populus tremula, Populus tremula x Populus alba, Populus tremula x Populus tremuloides, Populus tremuloides, Populus trichocarpa x Populus nigra, Populus x canadensis, Bruguiera gymnorhiza, Populus trichocarpa, Ricinus communis, Populus trichocarpa x Populus deltoides



ABOUT THIS RECORD

ID: MNEST002223
species: Populus trichocarpa x Populus nigra
miRNA family: MIRf1239
source: miRNEST

Taxonomy by NCBI:
Populus trichocarpa x Populus nigra Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
ATTCCAGGCTCTTTTCACTGA

miRNA*
GGTGGATAGAGCTTGGAGGAA

mismatches: 4
bulges: 0

View larger
pre-miRNA
CTCCGTACATAATTCCAGGCTCTTTTCACTGAGCACTGAAGAGGAACGATTAAATAGAGGATGGACGTATATATTTTCTTTCTCCATTGATTCTTTGGGA
CCTTCAGGACTGGTGGATAGAGCTTGGAGGAAGCTCCAGC


dot-bracket secondary structure
.............((((((((((.(((((((....((((((..(((.((((((...(((((.(((.((....)).))).)))))..)))))).)))....
.))))))...))))))).))))))))))(((...)))...



SIMILARITIES
miRBase no hits

PMRD ptc-miRf12015-akr: 1e-47

microPC no hits
UniProt no hits

RFAM no hits
most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record





Liczniki na strone;