miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Euphorbia esula, Hevea brasiliensis, Jatropha curcas, Linum usitatissimum, Manihot esculenta, Populus deltoides, Populus euphratica, Populus nigra, Populus tremula, Populus tremula x Populus alba, Populus tremula x Populus tremuloides, Populus tremuloides, Populus trichocarpa x Populus nigra, Populus x canadensis, Bruguiera gymnorhiza, Populus trichocarpa, Ricinus communis, Populus trichocarpa x Populus deltoides



ABOUT THIS RECORD

ID: MNEST002228
species: Populus trichocarpa x Populus nigra
miRNA family: MIR838
source: miRNEST

Taxonomy by NCBI:
Populus trichocarpa x Populus nigra Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TTTTCTTCTACTTCTTCCATT

miRNA*
GGAGAGGGAGAGGGAGAGA

mismatches: 1
bulges: 2

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pre-miRNA
CAGCCTCAAGCTTTTCTTCTACTTCTTCCATTTCTTTTTTCTGTGATGATTTTGAATCCGATCTCCAGGCAATGTAAAGTAGCCGCAGGCCAAAAAATGC
ATAAAGAACGGTGGCTGCACTATTTGTATGCTTCCTTGAAATTAAATTTGGCACGATTCTACCAAGTCCAGTAGAAAGTACCTAAATGACATGCACAACA
GCTTTAAGCTTCACCAACATTGAGAATAAGAAAAGTTCAGTGTAGTTGCTGGCTGGACCATTCCATTCAATGCCTTGCAGTGTCAGAAGAAAGAAAGGAG
AGGGAGAGGGAGAGA
GAGAACAA


dot-bracket secondary structure
....(((...((((((((((.(((((((..(((((((((((((...((...((((((..((..(((.(((.((.....)).)))(((.((((((....((
(((..(((.((((....)))).))).)))))...............))))))....((((((........)))))).((.........)).))).....(
(((...(((...((..((((((((...........)))))))).)).))))))))))....)).)))))).......))....)))))))))))))))))
))).)))))))))).
))).....



SIMILARITIES
miRBase no hits

PMRD no hits

microPC no hits
UniProt sp|Q6ZIB9|GDT14_ORYSJ: 6e-16

RFAM no hits
most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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