ABOUT THIS RECORDspecies: Medicago truncatula
miRNA family: MIR157
source: miRBase, original name: mtr-MIR156h (MI0005613)
Taxonomy by NCBI:
Medicago truncatula Medicago Trifolieae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTGACAGAAGATAGAGAGCAC miRNA* GCTCTTTATTCTTCTGTCATCA mismatches: 1 bulges: 1 |
pre-miRNA
TGCTGTTGACAGAAGATAGAGAGCACAGATGATGAAATGCATGGAAGGCAATGGCATCTCATTCCTTTGTGCTCTTTATTCTTCTGTCATCACC
dot-bracket secondary structure
...((.(((((((((((((((((((((((.(((((.((((.((.....))...)))).)))))..))))))))))))).)))))))))).))..
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454, Northern
references
[1] Bonnet E, Unpublished (2007).,
[2] Jagadeeswaran G, Zheng Y, Li YF, Shukla LI, Matts J, Hoyt P, Macmil SL, Wiley GB, Roe BA, Zhang W, Sunkar R, New Phytol. 184:85-98(2009)., "Cloning and characterization of small RNAs from Medicago truncatula reveals four novel legume-specific microRNA families"
TGCTGTTGACAGAAGATAGAGAGCACAGATGATGAAATGCATGGAAGGCAATGGCATCTCATTCCTTTGTGCTCTTTATTCTTCTGTCATCACC
dot-bracket secondary structure
...((.(((((((((((((((((((((((.(((((.((((.((.....))...)))).)))))..))))))))))))).)))))))))).))..
SIMILARITIES| miRBase gma-MIR156e: 6e-33 PMRD mtr-miR156h: 2e-48 microPC miR157: 4e-28 | UniProt no hits RFAM no hits |
Identical with: mtr-miR156h from PMRD (MNEST048697) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454, Northern
references
[1] Bonnet E, Unpublished (2007).,
[2] Jagadeeswaran G, Zheng Y, Li YF, Shukla LI, Matts J, Hoyt P, Macmil SL, Wiley GB, Roe BA, Zhang W, Sunkar R, New Phytol. 184:85-98(2009)., "Cloning and characterization of small RNAs from Medicago truncatula reveals four novel legume-specific microRNA families"
