ABOUT THIS RECORDspecies: Medicago truncatula
miRNA family: MIR169_2
source: miRBase, original name: mtr-MIR169m (MI0005630)
Taxonomy by NCBI:
Medicago truncatula Medicago Trifolieae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GAGCCAAGGATGACTTGCCGG miRNA* GGCAGGTCATCCTTCGGCTATA mismatches: 1 bulges: 1 |
pre-miRNA
AAATGGAGCCAAGGATGACTTGCCGGTATATTAGTTTGTCGCTAAAGCTAACTAGCTTTAGTTGTTGGGTACTCCCGGCAGGTCATCCTTCGGCTATATT
dot-bracket secondary structure
.((((.((((((((((((((((((((..((((........(((((((((....))))))))).....))))...)))))))))))))))).)))).))))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
degradome data
download this record
references
[1] Bonnet E, Unpublished (2007).,
AAATGGAGCCAAGGATGACTTGCCGGTATATTAGTTTGTCGCTAAAGCTAACTAGCTTTAGTTGTTGGGTACTCCCGGCAGGTCATCCTTCGGCTATATT
dot-bracket secondary structure
.((((.((((((((((((((((((((..((((........(((((((((....))))))))).....))))...)))))))))))))))).)))).))))
SIMILARITIES| miRBase mtr-MIR169e: 5e-52 PMRD osa-miR169b: 0.000005 microPC miR169: 0.00002 | UniProt no hits RFAM MIR169_2: 9e-51 |
Identical with: mtr-MIR169e from miRBase (MNEST040682) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
degradome data
download this record
references
[1] Bonnet E, Unpublished (2007).,
