ABOUT THIS RECORDspecies: Medicago truncatula
miRNA family: MIR169_8
source: miRBase, original name: mtr-MIR169p (MI0011795)
Taxonomy by NCBI:
Medicago truncatula Medicago Trifolieae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGAGCCAGGATGGCTTGCCGG miRNA* AGCGGGCCATCTTGTCTCACA mismatches: 3 bulges: 0 |
pre-miRNA
GAAGGTAGAGAGAGTGGATTTGAGCCAGGATGGCTTGCCGGCATGCATTTTAGGGTGTTGCTAGCGGGCCATCTTGTCTCACATTTGCTATCTTTCCTCT
dot-bracket secondary structure
..(((.(((((.((..(((.((((.(((((((((((((..(((.(((((....))))))))..))))))))))))).)))).)))..)).))))))))..
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
degradome data
download this record
evidence: 454
references
[1] Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M, Plant Cell. 21:2780-2796(2009)., "Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules"
GAAGGTAGAGAGAGTGGATTTGAGCCAGGATGGCTTGCCGGCATGCATTTTAGGGTGTTGCTAGCGGGCCATCTTGTCTCACATTTGCTATCTTTCCTCT
dot-bracket secondary structure
..(((.(((((.((..(((.((((.(((((((((((((..(((.(((((....))))))))..))))))))))))).)))).)))..)).))))))))..
SIMILARITIES| miRBase mtr-MIR169q: 0.0000000003 PMRD no hits microPC no hits | UniProt no hits RFAM MIR169_2: 1e-40 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
degradome data
download this record
evidence: 454
references
[1] Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M, Plant Cell. 21:2780-2796(2009)., "Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules"
