miRNEST 2.0, an integrative microRNA resource :: Browse
Home
Browse miRNAs
Deep-seq predictions
Mirtrons
miRNA genes
Degradomes
Download
Upload
Contact
Species belonging to selected taxon:
Medicago sativa
,
Medicago truncatula
ABOUT THIS RECORD
ID:
MNEST040705
species:
Medicago truncatula
miRNA family:
MIR390
source:
miRBase, original name:
mtr-MIR390
(
MI0005586
)
Taxonomy by NCBI:
Medicago truncatula
Medicago
Trifolieae
Papilionoideae
Fabaceae
Fabales
fabids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
AAGCTCAGGAGGGATAGCGCC
miRNA*
CGCTATCCATCCTGAGTTTCA
mismatches:
2
bulges:
0
View larger
pre-miRNA
CTGTT
AAGCTCAGGAGGGATAGCGCC
ATAGAATGTCTTCTTTTTTTGGTTCCATTTTATTGATTGATCTTCTCTTG
CGCTATCCATCCTGAGTTTCA
TGG
dot-bracket secondary structure
((((.
((((((((((.(((((((((.
..((((.(((.((......((....)).......))..))).))))...)
)))))))).)))))))))).)
)))
SIMILARITIES
miRBase
gma-MIR390a
:
0.000000000000005
PMRD
mtr-miR390
:
2e-33
microPC
miR390
:
0.00000008
UniProt
no hits
RFAM
MIR390: 3e-38
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
additional data
download this record
evidence:
454, Northern
references
[
1
] Bonnet E,
Unpublished (2007).
,
[
2
] Jagadeeswaran G, Zheng Y, Li YF, Shukla LI, Matts J, Hoyt P, Macmil SL, Wiley GB, Roe BA, Zhang W, Sunkar R,
New Phytol. 184:85-98(2009).
,
"Cloning and characterization of small RNAs from Medicago truncatula reveals four novel legume-specific microRNA families"