miRNEST 2.0, an integrative microRNA resource :: Browse
Home
Browse miRNAs
Deep-seq predictions
Mirtrons
miRNA genes
Degradomes
Download
Upload
Contact
Species belonging to selected taxon:
Medicago sativa
,
Medicago truncatula
ABOUT THIS RECORD
ID:
MNEST040706
species:
Medicago truncatula
miRNA family:
MIR393
source:
miRBase, original name:
mtr-MIR393
(
MI0001745
)
Taxonomy by NCBI:
Medicago truncatula
Medicago
Trifolieae
Papilionoideae
Fabaceae
Fabales
fabids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TCCAAAGGGATCGCATTGATC
miRNA*
TCATGCCATCCCTTTGGATT
mismatches:
1
bulges:
1
View larger
pre-miRNA
AACTGCAACTTGAGGAGGCA
TCCAAAGGGATCGCATTGATC
CTATAATATTTCAACTTTAGTCACTTTAATTTTCTCTCATATAATACTTAATTGGGA
TC
ATGCCATCCCTTTGGATT
TCTCCTTTAGTAGCTAC
dot-bracket secondary structure
....((.(((.(((((((.(
(((((((((((.((((.((((
(((.................................................)))))
))
)))).)))))))))))).
))))))).))).))...
SIMILARITIES
miRBase
tcc-MIR393a
:
0.00000000003
PMRD
mtr-miR393
:
1e-72
microPC
miR393
:
0.000007
UniProt
no hits
RFAM
no hits
Identical with:
mtr-miR393
from PMRD (
MNEST048730
)
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
additional data
degradome data
download this record
evidence:
Northern
references
[
1
] Dezulian T, Palatnik JF, Huson DH, Weigel D,
http://genomebiology.com/2005/6/11/p13 (2005).
,
"Conservation and divergence of microRNA families in plants"
[
2
] Jagadeeswaran G, Zheng Y, Li YF, Shukla LI, Matts J, Hoyt P, Macmil SL, Wiley GB, Roe BA, Zhang W, Sunkar R,
New Phytol. 184:85-98(2009).
,
"Cloning and characterization of small RNAs from Medicago truncatula reveals four novel legume-specific microRNA families"