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Species belonging to selected taxon:

Medicago sativa, Medicago truncatula



ABOUT THIS RECORD

ID: MNEST040707
species: Medicago truncatula
miRNA family: MIR393
source: miRBase, original name: mtr-MIR393b (MI0005601)

Taxonomy by NCBI:
Medicago truncatula Medicago Trifolieae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TCCAAAGGGATCGCATTGATC

miRNA*
TCATGCTATCCCTTTGGATT

mismatches: 1
bulges: 1

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pre-miRNA
AGGCATCCAAAGGGATCGCATTGATCCCAAATCTAATTAAGTCCCTAGCTACTTAATTAACAACTTAATTTCCTTAATATCTCATAATATTTGGGATCAT
GCTATCCCTTTGGATT
CAT


dot-bracket secondary structure
.((.((((((((((((.((((.((((((((((.(((((((((........))))))))).....((((.....))))...........))))))))))))
)).)))))))))))))
)..



SIMILARITIES
miRBase gma-MIR393: 0.000000000006

PMRD mtr-miR393b: 3e-63

microPC miR393: 0.000000002
UniProt no hits

RFAM no hits

Identical with: mtr-miR393b from PMRD (MNEST048731)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
degradome data
download this record
evidence: Northern

references

[1] Bonnet E, Unpublished (2007).,
[2] Jagadeeswaran G, Zheng Y, Li YF, Shukla LI, Matts J, Hoyt P, Macmil SL, Wiley GB, Roe BA, Zhang W, Sunkar R, New Phytol. 184:85-98(2009)., "Cloning and characterization of small RNAs from Medicago truncatula reveals four novel legume-specific microRNA families"




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