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Species belonging to selected taxon:
Medicago sativa
,
Medicago truncatula
ABOUT THIS RECORD
ID:
MNEST040710
species:
Medicago truncatula
miRNA family:
MIR395
source:
miRBase, original name:
mtr-MIR395c
(
MI0005070
)
Taxonomy by NCBI:
Medicago truncatula
Medicago
Trifolieae
Papilionoideae
Fabaceae
Fabales
fabids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
ATGAAGTGTTTGGGGGAACTC
miRNA*
GTTCCTTTGAACGCTTCATGC
mismatches:
2
bulges:
0
View larger
pre-miRNA
GA
GTTCCTTTGAACGCTTCATGC
ATGAGAATATCTATTTGGTCTAATATCCATTAGAAAAGATAGTCTTTTCTTCT
ATGAAGTGTTTGGGGGAACTC
dot-bracket secondary structure
((
(((((((..(((((((((((.
..(((((...((((((..((((((....))))))..))))))..)))))...)
))))))))))..)))))))))
SIMILARITIES
miRBase
mtr-MIR395k
:
2e-36
PMRD
mtr-miR395c
:
3e-50
microPC
miR395
:
0.000005
UniProt
no hits
RFAM
mir-395: 1e-34
Identical with:
mtr-miR395c
from PMRD (
MNEST048734
)
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
additional data
download this record
references
[
1
] Guddeti S, Zhang DC, Li AL, Leseberg CH, Kang H, Li XG, Zhai WX, Johns MA, Mao L,
Cell Res. 15:631-638(2005).
,
"Molecular evolution of the rice miR395 gene family"