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Species belonging to selected taxon:

Medicago sativa, Medicago truncatula



ABOUT THIS RECORD

ID: MNEST040710
species: Medicago truncatula
miRNA family: MIR395
source: miRBase, original name: mtr-MIR395c (MI0005070)

Taxonomy by NCBI:
Medicago truncatula Medicago Trifolieae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
ATGAAGTGTTTGGGGGAACTC

miRNA*
GTTCCTTTGAACGCTTCATGC

mismatches: 2
bulges: 0

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pre-miRNA
GAGTTCCTTTGAACGCTTCATGCATGAGAATATCTATTTGGTCTAATATCCATTAGAAAAGATAGTCTTTTCTTCTATGAAGTGTTTGGGGGAACTC

dot-bracket secondary structure
(((((((((..(((((((((((...(((((...((((((..((((((....))))))..))))))..)))))...)))))))))))..)))))))))


SIMILARITIES
miRBase mtr-MIR395k: 2e-36

PMRD mtr-miR395c: 3e-50

microPC miR395: 0.000005
UniProt no hits

RFAM mir-395: 1e-34

Identical with: mtr-miR395c from PMRD (MNEST048734)

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
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references

[1] Guddeti S, Zhang DC, Li AL, Leseberg CH, Kang H, Li XG, Zhai WX, Johns MA, Mao L, Cell Res. 15:631-638(2005)., "Molecular evolution of the rice miR395 gene family"




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