ABOUT THIS RECORDspecies: Medicago truncatula
miRNA family: MIR395
source: miRBase, original name: mtr-MIR395h (MI0005075)
Taxonomy by NCBI:
Medicago truncatula Medicago Trifolieae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ATGAAGTGTTTGGGGGAACTT miRNA* CTTTCTCTGAACACTTCATAC mismatches: 5 bulges: 0 |
pre-miRNA
GACTTTCTCTGAACACTTCATACAAGAGGTTATCCATCTAATCTAAAAGTCATTAGATATTTACGATGGGTCGTTCTTCAATGAAGTGTTTGGGGGAACT
T
dot-bracket secondary structure
...((((((..((((((((((..(((((...(((((((((((((((......))))))...)).)))))))..)))))..))))))))))..))))))..
.
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
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references
[1] Guddeti S, Zhang DC, Li AL, Leseberg CH, Kang H, Li XG, Zhai WX, Johns MA, Mao L, Cell Res. 15:631-638(2005)., "Molecular evolution of the rice miR395 gene family"
GACTTTCTCTGAACACTTCATACAAGAGGTTATCCATCTAATCTAAAAGTCATTAGATATTTACGATGGGTCGTTCTTCAATGAAGTGTTTGGGGGAACT
T
dot-bracket secondary structure
...((((((..((((((((((..(((((...(((((((((((((((......))))))...)).)))))))..)))))..))))))))))..))))))..
.
SIMILARITIES| miRBase mtr-MIR395g: 0.0000003 PMRD mtr-miR395h: 1e-52 microPC miR395: 0.0003 | UniProt no hits RFAM mir-395: 0.000001 |
Identical with: mtr-miR395h from PMRD (MNEST048739) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Guddeti S, Zhang DC, Li AL, Leseberg CH, Kang H, Li XG, Zhai WX, Johns MA, Mao L, Cell Res. 15:631-638(2005)., "Molecular evolution of the rice miR395 gene family"
