ABOUT THIS RECORDspecies: Medicago truncatula
miRNA family: MIR395
source: miRBase, original name: mtr-MIR395o (MI0005082)
Taxonomy by NCBI:
Medicago truncatula Medicago Trifolieae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ATGAAGTGTTTGGGGGAACTC miRNA* GTTCCTCTGAACTCTTCATCT mismatches: 3 bulges: 0 |
pre-miRNA
GAGTTCCTCTGAACTCTTCATCTAAAGGGCTATAGCAAGAAAGAAAGGAAAATCCTTGTATGATGAAGTGTTTGGGGGAACTC
dot-bracket secondary structure
(((((((((..(((.(((((((......((....))........((((.....))))....))))))).)))..)))))))))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Guddeti S, Zhang DC, Li AL, Leseberg CH, Kang H, Li XG, Zhai WX, Johns MA, Mao L, Cell Res. 15:631-638(2005)., "Molecular evolution of the rice miR395 gene family"
GAGTTCCTCTGAACTCTTCATCTAAAGGGCTATAGCAAGAAAGAAAGGAAAATCCTTGTATGATGAAGTGTTTGGGGGAACTC
dot-bracket secondary structure
(((((((((..(((.(((((((......((....))........((((.....))))....))))))).)))..)))))))))
SIMILARITIES| miRBase sbi-MIR395f: 0.00006 PMRD mtr-miR395o: 6e-42 microPC miR395: 0.000004 | UniProt no hits RFAM mir-395: 1e-40 |
Identical with: mtr-miR395o from PMRD (MNEST048746) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Guddeti S, Zhang DC, Li AL, Leseberg CH, Kang H, Li XG, Zhai WX, Johns MA, Mao L, Cell Res. 15:631-638(2005)., "Molecular evolution of the rice miR395 gene family"
