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Species belonging to selected taxon:

Medicago sativa, Medicago truncatula



ABOUT THIS RECORD

ID: MNEST040723
species: Medicago truncatula
miRNA family: MIR395
source: miRBase, original name: mtr-MIR395p (MI0005083)

Taxonomy by NCBI:
Medicago truncatula Medicago Trifolieae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TTGAAGCGTTTGGGGGAACTC

miRNA*
GTTCCCTTAAACATTTCATTA

mismatches: 2
bulges: 0

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pre-miRNA
GAGTTCCCTTAAACATTTCATTAAGGACTCAATTTCTTCTCTTCAACCTTGTTGAAGCGTTTGGGGGAACTC

dot-bracket secondary structure
((((((((((((((.(((((.(((((....................))))).))))).))))))))))))))


SIMILARITIES
miRBase no hits

PMRD mtr-miR395p: 2e-35

microPC no hits
UniProt no hits

RFAM mir-395: 3e-34

Identical with: mtr-miR395p from PMRD (MNEST048747)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
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references

[1] Guddeti S, Zhang DC, Li AL, Leseberg CH, Kang H, Li XG, Zhai WX, Johns MA, Mao L, Cell Res. 15:631-638(2005)., "Molecular evolution of the rice miR395 gene family"




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