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Species belonging to selected taxon:
Medicago sativa
,
Medicago truncatula
ABOUT THIS RECORD
ID:
MNEST040728
species:
Medicago truncatula
miRNA family:
MIR398
source:
miRBase, original name:
mtr-MIR398a
(
MI0005599
)
Taxonomy by NCBI:
Medicago truncatula
Medicago
Trifolieae
Papilionoideae
Fabaceae
Fabales
fabids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TGTGTTCTCAGGTCACCCCTT
miRNA*
GGAGTGACACTGAGAACACAAG
mismatches:
1
bulges:
1
View larger
pre-miRNA
TCTCAGA
GGAGTGACACTGAGAACACAAG
ATTGATTAATCATATAATGTATTTGGTTGTTACTAGTTGATTT
TGTGTTCTCAGGTCACCCCTT
TGAGT
dot-bracket secondary structure
.((((((
((.(((((.(((((((((((((
((..((((.....(((((.......)))))...))))..))))
)))))))))))))))).))))
)))).
SIMILARITIES
miRBase
vvi-MIR398a
:
0.00000002
PMRD
vvi-miR398a
:
0.00000002
microPC
miR398
:
0.0000003
UniProt
no hits
RFAM
MIR398: 1e-49
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
additional data
download this record
evidence:
Northern
references
[
1
] Bonnet E,
Unpublished (2007).
,
[
2
] Jagadeeswaran G, Zheng Y, Li YF, Shukla LI, Matts J, Hoyt P, Macmil SL, Wiley GB, Roe BA, Zhang W, Sunkar R,
New Phytol. 184:85-98(2009).
,
"Cloning and characterization of small RNAs from Medicago truncatula reveals four novel legume-specific microRNA families"