ABOUT THIS RECORDspecies: Medicago truncatula
miRNA family: MIR399
source: miRBase, original name: mtr-MIR399i (MI0005590)
Taxonomy by NCBI:
Medicago truncatula Medicago Trifolieae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGCCAAAGGAGATTTGCCCTG miRNA* GAGCAAATCTCTATTAGCAGA mismatches: 3 bulges: 0 |
pre-miRNA
AATGATAGAGCAAATCTCTATTAGCAGAACGAAGTAGAAAGCTTGGACATGCATGCTTCTGGTTTGCCAAAGGAGATTTGCCCTGCCATT
dot-bracket secondary structure
((((.(((.((((((((((.((.(((((..((((((....((........)).))))))...))))).)).)))))))))).))).))))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
degradome data
download this record
references
[1] Bonnet E, Unpublished (2007).,
AATGATAGAGCAAATCTCTATTAGCAGAACGAAGTAGAAAGCTTGGACATGCATGCTTCTGGTTTGCCAAAGGAGATTTGCCCTGCCATT
dot-bracket secondary structure
((((.(((.((((((((((.((.(((((..((((((....((........)).))))))...))))).)).)))))))))).))).))))
SIMILARITIES| miRBase mtr-MIR399h: 1e-43 PMRD mtr-miR399c: 0.000000000001 microPC miR399: 0.000004 | UniProt no hits RFAM mir-399: 8e-45 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
degradome data
download this record
references
[1] Bonnet E, Unpublished (2007).,
