ABOUT THIS RECORDspecies: Medicago truncatula
miRNA family: MIR399
source: miRBase, original name: mtr-MIR399j (MI0005591)
Taxonomy by NCBI:
Medicago truncatula Medicago Trifolieae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CGCCAAAGAAGATTTGCCCCG miRNA* GGGCAATGACTTCTTTGGCAGT mismatches: 5 bulges: 1 |
pre-miRNA
TTACTGGGCAATGACTTCTTTGGCAGTAGTTGACTTGATCATTCAGATGATGCAAACAAACTCACCGCCAAAGAAGATTTGCCCCGCAATT
dot-bracket secondary structure
.....((((((...((((((((((.((((((...((((((((....))))).)))...)))).)).))))))))))..)))))).......
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Bonnet E, Unpublished (2007).,
TTACTGGGCAATGACTTCTTTGGCAGTAGTTGACTTGATCATTCAGATGATGCAAACAAACTCACCGCCAAAGAAGATTTGCCCCGCAATT
dot-bracket secondary structure
.....((((((...((((((((((.((((((...((((((((....))))).)))...)))).)).))))))))))..)))))).......
SIMILARITIES| miRBase ptc-MIR399e: 0.00000002 PMRD mtr-miR399i: 7e-42 microPC no hits | UniProt no hits RFAM mir-399: 2e-45 |
Identical with: mtr-miR399i from PMRD (MNEST048757) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Bonnet E, Unpublished (2007).,
