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Species belonging to selected taxon:
Medicago sativa
,
Medicago truncatula
ABOUT THIS RECORD
ID:
MNEST040744
species:
Medicago truncatula
miRNA family:
MIR399
source:
miRBase, original name:
mtr-MIR399n
(
MI0005609
)
Taxonomy by NCBI:
Medicago truncatula
Medicago
Trifolieae
Papilionoideae
Fabaceae
Fabales
fabids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TGCCAAAGGAGAGCTGCCCTA
miRNA*
GGGCATGTCTCTATTGGCAGG
mismatches:
3
bulges:
0
View larger
pre-miRNA
AGTCATA
GGGCATGTCTCTATTGGCAGG
TGATATGGTGATATTTCATTTGACTTTAAGGCTCTAGAAATTCACT
TGCCAAAGGAGAGCTGCCCTA
CGAGT
dot-bracket secondary structure
..((.((
(((((..(((((.((((((((
(((...(((((....))))).((((....)).)).......)))))
)))))).)))))..)))))))
.))..
SIMILARITIES
miRBase
mtr-MIR399d
:
1e-49
PMRD
mtr-miR399d
:
1e-49
microPC
miR399
:
0.0003
UniProt
no hits
RFAM
mir-399: 0.00008
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
additional data
download this record
references
[
1
] Bonnet E,
Unpublished (2007).
,