ABOUT THIS RECORDspecies: Medicago truncatula
miRNA family: MIR1507
source: miRBase, original name: mtr-MIR1507 (MI0010541)
Taxonomy by NCBI:
Medicago truncatula Medicago Trifolieae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CCTCGTTCCATACATCATCTAG miRNA* AGAGTTGTATGGAACGAAAGA mismatches: 5 bulges: 1 |
pre-miRNA
ACCATAAACTCCAATTAATGTGGTGTTGAGTAGAGTTGTATGGAACGAAAGATGGGAATTTCTTGTTGAATTCTATTCATTCAATTTTCCCTCCCTCGTT
CCATACATCATCTAGCCAATACTGTGTTAACAATTGTCTTTGGT
dot-bracket secondary structure
((((...((.....((((((..((((((..((((..((((((((((((..((.(((((......(((((((.......))))))).)))))))..)))))
)))))))...))))..))))))..)))))).....))...))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
degradome data
download this record
evidence: Northern, Solexa, 454
references
[1] Szittya G, Moxon S, Santos DM, Jing R, Fevereiro MP, Moulton V, Dalmay T, BMC Genomics. 9:593(2008)., "High-throughput sequencing of Medicago truncatula short RNAs identifies eight new miRNA families"
[2] Jagadeeswaran G, Zheng Y, Li YF, Shukla LI, Matts J, Hoyt P, Macmil SL, Wiley GB, Roe BA, Zhang W, Sunkar R, New Phytol. 184:85-98(2009)., "Cloning and characterization of small RNAs from Medicago truncatula reveals four novel legume-specific microRNA families"
ACCATAAACTCCAATTAATGTGGTGTTGAGTAGAGTTGTATGGAACGAAAGATGGGAATTTCTTGTTGAATTCTATTCATTCAATTTTCCCTCCCTCGTT
CCATACATCATCTAGCCAATACTGTGTTAACAATTGTCTTTGGT
dot-bracket secondary structure
((((...((.....((((((..((((((..((((..((((((((((((..((.(((((......(((((((.......))))))).)))))))..)))))
)))))))...))))..))))))..)))))).....))...))))
SIMILARITIES| miRBase no hits PMRD mtr-miR1507: 4e-78 microPC no hits | UniProt no hits RFAM no hits |
Identical with: mtr-miR1507 from PMRD (MNEST048762) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
degradome data
download this record
evidence: Northern, Solexa, 454
references
[1] Szittya G, Moxon S, Santos DM, Jing R, Fevereiro MP, Moulton V, Dalmay T, BMC Genomics. 9:593(2008)., "High-throughput sequencing of Medicago truncatula short RNAs identifies eight new miRNA families"
[2] Jagadeeswaran G, Zheng Y, Li YF, Shukla LI, Matts J, Hoyt P, Macmil SL, Wiley GB, Roe BA, Zhang W, Sunkar R, New Phytol. 184:85-98(2009)., "Cloning and characterization of small RNAs from Medicago truncatula reveals four novel legume-specific microRNA families"
