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Species belonging to selected taxon:

Medicago sativa, Medicago truncatula



ABOUT THIS RECORD

ID: MNEST040755
species: Medicago truncatula
miRNA family: MIR2088
source: miRBase, original name: mtr-MIR2088a (MI0010545)

Taxonomy by NCBI:
Medicago truncatula Medicago Trifolieae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
AGGCCTAGATTACATTGGAC

miRNA*
CCAATGTAATCTAGGTCTAC

mismatches: 0
bulges: 0

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pre-miRNA
TCTCTGTATCTCGAAGTAGACGGCGGCTTAACCGATGTAGGCCTAGATTACATTGGACAAAACAGTCCAAACTTGAGATGGTTACTTCTTGGTCCAATGT
AATCTAGGTCTAC
ATCTGTTAAGTCTCTAAAGTATTCTGAAAGAGA


dot-bracket secondary structure
(((((...((..(((......((.((((((((.(((((((((((((((((((((((((.....(((...((((......))))))).....)))))))))
)))))))))))))
))).)))))))).))......))).)).)))))



SIMILARITIES
miRBase mtr-MIR2088b: 9e-61

PMRD mtr-miR2088: 3e-79

microPC no hits
UniProt sp|O04197|COI1_ARATH: 0.00007

RFAM no hits

Identical with: mtr-MIR2088b from miRBase (MNEST040756)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Northern, Solexa, 454

references

[1] Szittya G, Moxon S, Santos DM, Jing R, Fevereiro MP, Moulton V, Dalmay T, BMC Genomics. 9:593(2008)., "High-throughput sequencing of Medicago truncatula short RNAs identifies eight new miRNA families"
[2] Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M, Plant Cell. 21:2780-2796(2009)., "Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules"




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