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Species belonging to selected taxon:

Medicago sativa, Medicago truncatula



ABOUT THIS RECORD

ID: MNEST040757
species: Medicago truncatula
miRNA family: MIR1510
source: miRBase, original name: mtr-MIR2089 (MI0010546)

Taxonomy by NCBI:
Medicago truncatula Medicago Trifolieae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TTACCTATTCCACCAATTCCAT

miRNA*
AGGATTGGTGTAATAGGTAAAA

mismatches: 2
bulges: 0

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pre-miRNA
GCAGGCAACCAAGCATTCAAGATCTAGAGCAAGATTTATTTTACCTATTCCACCAATTCCATTGATCCTGGTTTCAAGATCTGAAAGTGAATCTGGGATG
TATAGGATTGGTGTAATAGGTAAAACAACACTTGCACTAGAAGCAAAATATATATTTGTTTGC


dot-bracket secondary structure
((((((((..............(((((.(((((..((.(((((((((((.(((((((((.((..((((..(.((((...........)))).)..)))).
.)).))))))))).))))))))))).))..))))).)))))..............))))))))



SIMILARITIES
miRBase gso-MIR1510b: 0.000002

PMRD mtr-miR2089: 2e-89

microPC no hits
UniProt no hits

RFAM no hits

Identical with: mtr-miR2089 from PMRD (MNEST048777)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
degradome data
download this record
evidence: Northern, Solexa

references

[1] Szittya G, Moxon S, Santos DM, Jing R, Fevereiro MP, Moulton V, Dalmay T, BMC Genomics. 9:593(2008)., "High-throughput sequencing of Medicago truncatula short RNAs identifies eight new miRNA families"




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