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Species belonging to selected taxon:
Medicago sativa
,
Medicago truncatula
ABOUT THIS RECORD
ID:
MNEST040757
species:
Medicago truncatula
miRNA family:
MIR1510
source:
miRBase, original name:
mtr-MIR2089
(
MI0010546
)
Taxonomy by NCBI:
Medicago truncatula
Medicago
Trifolieae
Papilionoideae
Fabaceae
Fabales
fabids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TTACCTATTCCACCAATTCCAT
miRNA*
AGGATTGGTGTAATAGGTAAAA
mismatches:
2
bulges:
0
View larger
pre-miRNA
GCAGGCAACCAAGCATTCAAGATCTAGAGCAAGATTTATT
TTACCTATTCCACCAATTCCAT
TGATCCTGGTTTCAAGATCTGAAAGTGAATCTGGGATG
TAT
AGGATTGGTGTAATAGGTAAAA
CAACACTTGCACTAGAAGCAAAATATATATTTGTTTGC
dot-bracket secondary structure
((((((((..............(((((.(((((..((.((
(((((((((.(((((((((.((
..((((..(.((((...........)))).)..)))).
.))
.))))))))).)))))))))))
.))..))))).)))))..............))))))))
SIMILARITIES
miRBase
gso-MIR1510b
:
0.000002
PMRD
mtr-miR2089
:
2e-89
microPC
no hits
UniProt
no hits
RFAM
no hits
Identical with:
mtr-miR2089
from PMRD (
MNEST048777
)
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
additional data
degradome data
download this record
evidence:
Northern, Solexa
references
[
1
] Szittya G, Moxon S, Santos DM, Jing R, Fevereiro MP, Moulton V, Dalmay T,
BMC Genomics. 9:593(2008).
,
"High-throughput sequencing of Medicago truncatula short RNAs identifies eight new miRNA families"