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Species belonging to selected taxon:
Medicago sativa
,
Medicago truncatula
ABOUT THIS RECORD
ID:
MNEST040948
species:
Medicago truncatula
miRNA family:
MIR2653
source:
miRBase, original name:
mtr-MIR2653c
(
MI0011985
)
Taxonomy by NCBI:
Medicago truncatula
Medicago
Trifolieae
Papilionoideae
Fabaceae
Fabales
fabids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TCACGCTGCTGTGAACATGAT
miRNA*
TATTTGACTGTCAGCGACGTC
mismatches:
5
bulges:
2
View larger
pre-miRNA
CGACAACCCTCTTCCAAA
TCACGCTGCTGTGAACATGAT
TGAGGTATATGAGGAAGCTCCCGGACTTGACGTCCGTAATGTTACAACTCCTCTGGTGCCA
CTACACATCAAGTTATGCCAAGCCTCTCTGTTTGACCATGATCATGCCAATTGCCAAGAATGATTCTGTAATCCTTTGGGTTGCTGCGTTGTTTAAAATG
ACATCCAGAGCTTGATGAACAACAAT
TATTTGACTGTCAGCGACGTC
TGTGTGATTGTGCCAGTCT
dot-bracket secondary structure
..................
...((((((.((.((.(((((
((.(((((..((((((((...(((((.....)))))....))).....)))))..))))).
.....(((((((((.((.(((((......)))))...(((.((((((.....))...(((..((.(.(((((((...))))))).).))..)))...)))
)))).)).))))))))).....))))
))))).)).).)))))..(.(
((.((......))))).).
SIMILARITIES
miRBase
mtr-MIR2653b
:
1e-150
PMRD
no hits
microPC
no hits
UniProt
no hits
RFAM
no hits
Identical with:
mtr-MIR2653a
from miRBase (
MNEST040946
)
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
additional data
download this record
evidence:
454
references
[
1
] Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M,
Plant Cell. 21:2780-2796(2009).
,
"Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules"