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Species belonging to selected taxon:

Medicago sativa, Medicago truncatula



ABOUT THIS RECORD

ID: MNEST008374
species: Medicago truncatula
miRNA family: MIR1439
source: miRNEST

Taxonomy by NCBI:
Medicago truncatula Medicago Trifolieae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TTTTGGGACGGAGGGAGTATA

miRNA*
AATTCCTTTAGTCTCAGGCAA

mismatches: 5
bulges: 0

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pre-miRNA
TTTTTTTTTTTTTTTTTTTTTGGGACGGAGGGAGTATAACTAATATTTAAAGTGGTAAATGGTGTTTCAAATTATACAATTTACACAAAACATAAATAAT
TTTTCATCCTTTACTTACAAACTTCATGGATGATTTTCTTGACGATCTTCTCCTTTAACAAATCGACACCAAAACCAATGTTTTTCCCATATGGTGTACA
TTGAATCCAAAGGAATTCCTTTAGTCTCAGGCAAGAAAAATATAATAA


dot-bracket secondary structure
.........((((((((.((((((((.((((((((...((((..........))))...(((((((..(((((((....................)))))
)).((((((..................)))))).(((.((((.((.....))..)))).)))..)))))))....((((((....((.....))...)))
)))..(((...))))))))))).)))))))).))))))))........



SIMILARITIES
miRBase no hits

PMRD osa-miRf10322-akr: 0.0002

microPC no hits
UniProt sp|Q93Y91|STP5_ARATH: 0.000000001

RFAM no hits
most similar mature miRNAs

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
degradome data
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