ABOUT THIS RECORDspecies: Medicago truncatula
miRNA family: MIR393
source: miRNEST
Taxonomy by NCBI:
Medicago truncatula Medicago Trifolieae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCCAAAGGGATCGCATTGTTT miRNA* GCTTGCGAATCTTTTTGCATC mismatches: 2 bulges: 2 |
pre-miRNA
CCTCGCACGACGACATCCAAAGGGATCGCATTGTTTCATACTTCCCTATGTCTGTTAGAAGCGCCGTGTCTCCGAAAGGACAGTCTCTAATCTCAAGCTT
GCGAATCTTTTTGCATCCGTTCAATACAT
dot-bracket secondary structure
........((((..((.(((((((((((((..((((............(((((.((.((.((.....)).)).))..)))))............)))).)
))).))))))))).)).))))........
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
degradome data
download this record
CCTCGCACGACGACATCCAAAGGGATCGCATTGTTTCATACTTCCCTATGTCTGTTAGAAGCGCCGTGTCTCCGAAAGGACAGTCTCTAATCTCAAGCTT
GCGAATCTTTTTGCATCCGTTCAATACAT
dot-bracket secondary structure
........((((..((.(((((((((((((..((((............(((((.((.((.((.....)).)).))..)))))............)))).)
))).))))))))).)).))))........
SIMILARITIES| miRBase sbi-MIR393: 0.0004 PMRD vvi-miR393b: 0.0004 microPC no hits | UniProt sp|Q9LW29|AFB2_ARATH: 0.000000000000002 RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
degradome data
download this record
