ABOUT THIS RECORDspecies: Medicago truncatula
miRNA family: MIR162
source: miRNEST
Taxonomy by NCBI:
Medicago truncatula Medicago Trifolieae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCGATAAACCTCTGCATCCAG miRNA* GGATGCAGCGGTTCATCGATC mismatches: 2 bulges: 0 |
pre-miRNA
AAGTTCGTCACTGGATGCAGCGGTTCATCGATCTGTTCCTGAATTTTGTTTGTCTCGTAAAACAAACATGAATCGGTCGATAAACCTCTGCATCCAGCGC
TCACTT
dot-bracket secondary structure
((((..((..((((((((((.((((.(((((((.((((.((...(((((((........))))))))).)))).))))))).)))).)))))))))).))
..))))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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AAGTTCGTCACTGGATGCAGCGGTTCATCGATCTGTTCCTGAATTTTGTTTGTCTCGTAAAACAAACATGAATCGGTCGATAAACCTCTGCATCCAGCGC
TCACTT
dot-bracket secondary structure
((((..((..((((((((((.((((.(((((((.((((.((...(((((((........))))))))).)))).))))))).)))).)))))))))).))
..))))
SIMILARITIES| miRBase mtr-MIR162: 2e-55 PMRD mtr-miR162d: 3e-44 microPC miR162: 3e-44 | UniProt no hits RFAM MIR162_2: 9e-45 | most similar mature miRNAs |
Identical with: miR162 from microPC (MNEST046557) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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