miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Medicago sativa, Medicago truncatula



ABOUT THIS RECORD

ID: MNEST008413
species: Medicago truncatula
miRNA family: miR399e
source: miRNEST

Taxonomy by NCBI:
Medicago truncatula Medicago Trifolieae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 GGGCTTCTCTTTCTTGGCAGG

miRNA*
 TGCCAAAGGAGAGTTGCCCTG

mismatches: 3
bulges: 0
View larger
pre-miRNA
 GCACGAGGTGGTGAAGAGTAAGCAAATCAGCTATAGGGCTTCTCTTTCTTGGCAGGAAATTATCATGACCATTCCATCATGTGTCTTGCCAAAGGAGAGT
TGCCCTGTTGCTGTTTTAGCTTAATGTGTATTCATCTTC

dot-bracket secondary structure
....(((((((.......(((((.((.((((.(((((((..((((((.(((((((((......(((((........)))))..))))))))).)))))).
.))))))).))))..)).)))))........))))))).


SIMILARITIES
miRBase pvu-MIR399a: 1e-25

PMRD mtr-miR399g: 6e-34

microPC miR399: 3e-36		UniProt no hits

RFAM mir-399: 5e-47		most similar mature miRNAs

Identical with: miR399 from microPC (MNEST046373)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
degradome data
download this record




Liczniki na strone;