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Species belonging to selected taxon:

Medicago sativa, Medicago truncatula



ABOUT THIS RECORD

ID: MNEST008414
species: Medicago truncatula
miRNA family: MIR399
source: miRNEST

Taxonomy by NCBI:
Medicago truncatula Medicago Trifolieae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TGCCAAAGGAGAGTTGCCCTG

miRNA*
GGGCTTCTCTTTCTTGGCAGG

mismatches: 3
bulges: 0

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pre-miRNA
TGCCAAAAGAAGATGTGGTGAAGAGTAAGCAAATCAGCTATAGGGCTTCTCTTTCTTGGCAGGAAATTATCATGACCATTCCATCATGTGTCTTGCCAAA
GGAGAGTTGCCCTG
TTGCTGTTTTAGCTTAATGTGTATTCATCTTCTATATGT


dot-bracket secondary structure
.......((((((((.((((.....(((((.((.((((.(((((((..((((((.(((((((((......(((((........)))))..))))))))).
))))))..))))))
).))))..)).))))).....))))))))))))......



SIMILARITIES
miRBase pvu-MIR399a: 2e-25

PMRD mtr-miR399g: 7e-34

microPC miR399: 3e-36
UniProt no hits

RFAM mir-399: 6e-47
most similar mature miRNAs

Identical with: miR399 from microPC (MNEST046373)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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