ABOUT THIS RECORDspecies: Lottia gigantea
miRNA family: mir-9
source: miRBase, original name: lgi-mir-79 (MI0010114)
Taxonomy by NCBI:
Lottia gigantea Lottia Lottiidae Acmaeioidea Nacellina Docoglossa Eogastropoda Gastropoda Mollusca Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ATAAAGCTAGGTTACCAAAGGC miRNA* CTTTGGTTATCTAGCTGTATGA mismatches: 2 bulges: 0 |
pre-miRNA
GAAGTGAAAGCTCTGTTTTTGTCTTTGGTTATCTAGCTGTATGATTGAAATAGAAACATTATAAAGCTAGGTTACCAAAGGCAAAAATGGTGACTATACT
C
dot-bracket secondary structure
..((((....(.(((((((((((((((((.((((((((.((((((............)))))).)))))))).))))))))))))))))).)....))))
.
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ, Evol Dev. 11:50-68(2009)., "The deep evolution of metazoan microRNAs"
GAAGTGAAAGCTCTGTTTTTGTCTTTGGTTATCTAGCTGTATGATTGAAATAGAAACATTATAAAGCTAGGTTACCAAAGGCAAAAATGGTGACTATACT
C
dot-bracket secondary structure
..((((....(.(((((((((((((((((.((((((((.((((((............)))))).)))))))).))))))))))))))))).)....))))
.
SIMILARITIES| miRBase lgi-mir-9: 5e-52 PMRD no hits microPC no hits | UniProt no hits RFAM mir-9: 0.0000000004 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ, Evol Dev. 11:50-68(2009)., "The deep evolution of metazoan microRNAs"
