miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Aedes aegypti, Culex quinquefasciatus, Anopheles gambiae, Phlebotomus papatasi, Lutzomyia longipalpis, Anopheles stephensi, Polypedilum vanderplanki



ABOUT THIS RECORD

ID: MNEST036001
species: Culex quinquefasciatus
miRNA family: bantam
source: miRBase, original name: cqu-bantam (MI0013610)

Taxonomy by NCBI:
Culex quinquefasciatus Culex pipiens complex Culex Culex Culicini Culicinae Culicidae Culicoidea Culicimorpha Nematocera Diptera Endopterygota Neoptera Pterygota Dicondylia Insecta Hexapoda Pancrustacea Mandibulata Arthropoda Panarthropoda Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
CCGGTTTTCATTTTCGATCTGAC

miRNA*
GAGATCATTTTGAAAGCTGATT

mismatches: 6
bulges: 1

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pre-miRNA
AGAACCGGTTTTCATTTTCGATCTGACTTATTTGATTTAACAGAGTGAGATCATTTTGAAAGCTGATTTT

dot-bracket secondary structure
.....(((((((((.....(((((.((((.............)))).)))))....))))))))).....


SIMILARITIES
miRBase aae-bantam: 4e-30

PMRD no hits

microPC no hits
UniProt no hits

RFAM bantam: 5e-33

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa

references

[1] Skalsky RL, Vanlandingham DL, Scholle F, Higgs S, Cullen BR, BMC Genomics. 11:119(2010)., "Identification of microRNAs expressed in two mosquito vectors, Aedes albopictus and Culex quinquefasciatus"




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