miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Caenorhabditis elegans, Ancylostoma caninum, Ascaris suum, Heterorhabditis bacteriophora, Pristionchus pacificus, Caenorhabditis japonica, Caenorhabditis brenneri, Strongyloides ratti, Brugia malayi, Trichinella spiralis, Meloidogyne hapla, Heterodera glycines, Meloidogyne incognita, Caenorhabditis remanei, Trichinella pseudospiralis, Onchocerca volvulus, Nippostrongylus brasiliensis, Meloidogyne chitwoodi, Globodera rostochiensis, Strongyloides stercoralis, Ancylostoma ceylanicum



ABOUT THIS RECORD

ID: MNEST009507
species: Trichinella spiralis
miRNA family: mir-87
source: miRNEST

Taxonomy by NCBI:
Trichinella spiralis Trichinella Trichinellidae Trichocephalida Enoplia Enoplea Nematoda Pseudocoelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TGAGCAAAGTTTCAGGTGTGT

miRNA*
GCGCCTGGAACTTTCGTCTCAGC

mismatches: 2
bulges: 2

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pre-miRNA
GGAAGAAGGCCTTTTGCCTGGCGCCTGGAACTTTCGTCTCAGCCTTAGATTTTGACAAGGTGAGCAAAGTTTCAGGTGTGTCGGCGAACAGGCAATAT

dot-bracket secondary structure
........((((((((((..((((((((((((((.(.((((.((((..........)))))))))))))))))))))))...)))))).)))).....


SIMILARITIES
miRBase aae-mir-87: 0.00000002

PMRD no hits

microPC no hits
UniProt no hits

RFAM mir-87: 9e-45
most similar mature miRNAs

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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