miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Bicyclus anynana, Bombyx mori, Choristoneura fumiferana, Spodoptera frugiperda, Heliothis virescens, Antheraea assama, Spodoptera littoralis, Samia cynthia ricini, Danaus plexippus, Papilio xuthus, Ostrinia nubilalis, Trichoplusia ni, Epiphyas postvittana



ABOUT THIS RECORD

ID: MNEST009809
species: Trichoplusia ni
miRNA family: miR-3159
source: miRNEST

Taxonomy by NCBI:
Trichoplusia ni Trichoplusia Plusiinae Noctuidae Noctuoidea Obtectomera Ditrysia Heteroneura Neolepidoptera Glossata Lepidoptera Amphiesmenoptera Endopterygota Neoptera Pterygota Dicondylia Insecta Hexapoda Pancrustacea Mandibulata Arthropoda Panarthropoda Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
AAGGATTACTAGTGTCGGCCG

miRNA*
GCTCATGTACAGGTAATCTTGGA

mismatches: 3
bulges: 2

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pre-miRNA
CCACGAATACAAAGGATTACTAGTGTCGGCCGATGGATACATGAACTTGCAACTAGCAAACACTGAGGAAATCGTCGACGGCTCATGTACAGGTAATCTT
GGA
GAAGTTCT


dot-bracket secondary structure
....((((....(((((((((.((((.(((((.(((..........((((.....))))...............))).))))).))..)).)))))))))
...
...)))).



SIMILARITIES
miRBase no hits

PMRD no hits

microPC no hits
UniProt sp|Q24297|RUXF_DROME: 0.0000000003

RFAM no hits
most similar mature miRNAs

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record





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