ABOUT THIS RECORDspecies: Trichoplusia ni
miRNA family: miR-3159
source: miRNEST
Taxonomy by NCBI:
Trichoplusia ni Trichoplusia Plusiinae Noctuidae Noctuoidea Obtectomera Ditrysia Heteroneura Neolepidoptera Glossata Lepidoptera Amphiesmenoptera Endopterygota Neoptera Pterygota Dicondylia Insecta Hexapoda Pancrustacea Mandibulata Arthropoda Panarthropoda Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AAGGATTACTAGTGTCGGCCG miRNA* GCTCATGTACAGGTAATCTTGGA mismatches: 3 bulges: 2 |
pre-miRNA
CCACGAATACAAAGGATTACTAGTGTCGGCCGATGGATACATGAACTTGCAACTAGCAAACACTGAGGAAATCGTCGACGGCTCATGTACAGGTAATCTT
GGAGAAGTTCT
dot-bracket secondary structure
....((((....(((((((((.((((.(((((.(((..........((((.....))))...............))).))))).))..)).)))))))))
......)))).
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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CCACGAATACAAAGGATTACTAGTGTCGGCCGATGGATACATGAACTTGCAACTAGCAAACACTGAGGAAATCGTCGACGGCTCATGTACAGGTAATCTT
GGAGAAGTTCT
dot-bracket secondary structure
....((((....(((((((((.((((.(((((.(((..........((((.....))))...............))).))))).))..)).)))))))))
......)))).
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt sp|Q24297|RUXF_DROME: 0.0000000003 RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record
