ABOUT THIS RECORDspecies: Nuphar advena
miRNA family: MIR390
source: miRNEST
Taxonomy by NCBI:
Nuphar advena Nuphar Nymphaeaceae Nymphaeales basal Magnoliophyta Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AAGCTCAGGAGGGATAGCGCC miRNA* CGCTGTCTATCCTGAGCATTA mismatches: 2 bulges: 0 |
pre-miRNA
CAGCAGCAATGAGAAGCTCTAAAGCTCAGGAGGGATAGCGCCTAACAGTGATTTGGAAACTGTATATATATGTATATATATGGTGAAGCATGAGCATGGG
TGGCGCTGTCTATCCTGAGCATTATGGTTTCTTACTTGCTTT
dot-bracket secondary structure
....((((((((((((((.(((.((((((((.((((((((((..((.(((.((((...(((((((((((....)))))))))))......)))))))..)
))))))))))).)))))))).))).))))))))).)))))..
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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CAGCAGCAATGAGAAGCTCTAAAGCTCAGGAGGGATAGCGCCTAACAGTGATTTGGAAACTGTATATATATGTATATATATGGTGAAGCATGAGCATGGG
TGGCGCTGTCTATCCTGAGCATTATGGTTTCTTACTTGCTTT
dot-bracket secondary structure
....((((((((((((((.(((.((((((((.((((((((((..((.(((.((((...(((((((((((....)))))))))))......)))))))..)
))))))))))).)))))))).))).))))))))).)))))..
SIMILARITIES| miRBase tcc-MIR390b: 0.000002 PMRD bna-miR390c: 0.000002 microPC miR390: 0.000000000000008 | UniProt no hits RFAM MIR390: 0.00003 | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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