miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Bicyclus anynana, Bombyx mori, Spodoptera frugiperda, Heliothis virescens, Antheraea assama, Spodoptera littoralis, Samia cynthia ricini, Danaus plexippus, Papilio xuthus, Ostrinia nubilalis, Trichoplusia ni



ABOUT THIS RECORD

ID: MNEST035537
species: Bombyx mori
miRNA family: mir-99
source: miRBase, original name: bmo-mir-100 (MI0012291)

Taxonomy by NCBI:
Bombyx mori Bombyx Bombycinae Bombycidae Bombyciformes Bombycoidea Obtectomera Ditrysia Heteroneura Neolepidoptera Glossata Lepidoptera Amphiesmenoptera Endopterygota Neoptera Pterygota Dicondylia Insecta Hexapoda Pancrustacea Mandibulata Arthropoda Panarthropoda Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
AACCCGTAGATCCGAACTTGTG

miRNA*
CAATATCGATTCTAAAAGTTGC

mismatches: 8
bulges: 0

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pre-miRNA
CATTAAGCCTCTTTAACTGGAACCCGTAGATCCGAACTTGTGCGCTATTGTCGTTGGGGACTCCGTCCAATCGCGCGTAACGATAGCGACTATTCAATGG
CAACAATATCGATTCTAAAAGTTGCCGGCAATCAAAACCAAA


dot-bracket secondary structure
................(((((((...((((..(((..((((..(((((((..((((.((((...)))).((((.......))))..))))....))))))
).))))..)))..))))...))).))))..............



SIMILARITIES
miRBase aae-mir-100: 0.0000004

PMRD no hits

microPC no hits
UniProt no hits

RFAM mir-10: 0.000008

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa

references

[1] Liu S, Li D, Li Q, Zhao P, Xiang Z, Xia Q, BMC Genomics. 11:148(2010)., "MicroRNAs of Bombyx mori identified by Solexa sequencing"




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