miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Bicyclus anynana, Bombyx mori, Spodoptera frugiperda, Heliothis virescens, Antheraea assama, Spodoptera littoralis, Samia cynthia ricini, Danaus plexippus, Papilio xuthus, Ostrinia nubilalis, Trichoplusia ni



ABOUT THIS RECORD

ID: MNEST035562
species: Bombyx mori
miRNA family: mir-306
source: miRBase, original name: bmo-mir-306a (MI0012201)

Taxonomy by NCBI:
Bombyx mori Bombyx Bombycinae Bombycidae Bombyciformes Bombycoidea Obtectomera Ditrysia Heteroneura Neolepidoptera Glossata Lepidoptera Amphiesmenoptera Endopterygota Neoptera Pterygota Dicondylia Insecta Hexapoda Pancrustacea Mandibulata Arthropoda Panarthropoda Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TCAGGTACTAGGTGACTCTGA

miRNA*
AGAGCCGCCTCGTGCCTCAGC

mismatches: 3
bulges: 0

View larger
pre-miRNA
CCGCGGGAGACGGAGGCGGGCGGCCGCCTCAGGTACTAGGTGACTCTGAGTGGTGCCGGTCTCAGAGCCGCCTCGTGCCTCAGCGCGGGCTCCGCCGACA
CGTCCGCC


dot-bracket secondary structure
..(((((....(..((((((.(.((((((.((((((.(((((.(((((((((....))..))))))).))))).)))))).)).)))).)))))))..).
..))))).



SIMILARITIES
miRBase bmo-mir-306b: 1e-37

PMRD no hits

microPC no hits
UniProt no hits

RFAM no hits

Identical with: bmo-mir-306b from miRBase (MNEST035563)

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned, RT-PCR, Solexa, SOLID
deep sequencing data evidence

references

[1] Yu X, Zhou Q, Cai Y, Luo Q, Lin H, Hu S, Yu J, Genomics. 94:438-444(2009)., "A discovery of novel microRNAs in the silkworm (Bombyx mori) genome"
[2] Liu S, Li D, Li Q, Zhao P, Xiang Z, Xia Q, BMC Genomics. 11:148(2010)., "MicroRNAs of Bombyx mori identified by Solexa sequencing"
[3] Cai Y, Yu X, Zhou Q, Yu C, Hu H, Liu J, Lin H, Yang J, Zhang B, Cui P, Hu S, Yu J, Funct Integr Genomics. 10:405-415(2010)., "Novel microRNAs in silkworm (Bombyx mori)"




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