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Species belonging to selected taxon:

Bicyclus anynana, Bombyx mori, Spodoptera frugiperda, Heliothis virescens, Antheraea assama, Spodoptera littoralis, Samia cynthia ricini, Danaus plexippus, Papilio xuthus, Ostrinia nubilalis, Trichoplusia ni



ABOUT THIS RECORD

ID: MNEST035563
species: Bombyx mori
miRNA family: mir-306
source: miRBase, original name: bmo-mir-306b (MI0012989)

Taxonomy by NCBI:
Bombyx mori Bombyx Bombycinae Bombycidae Bombyciformes Bombycoidea Obtectomera Ditrysia Heteroneura Neolepidoptera Glossata Lepidoptera Amphiesmenoptera Endopterygota Neoptera Pterygota Dicondylia Insecta Hexapoda Pancrustacea Mandibulata Arthropoda Panarthropoda Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TGAGGCACGAGGCGGCTCTGA

miRNA*
AGAGTCACCTAGTACCTGAGG

mismatches: 4
bulges: 0

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pre-miRNA
GAGCCCGCGCTGAGGCACGAGGCGGCTCTGAGACCGGCACCACTCAGAGTCACCTAGTACCTGAGGCGGCCGCCCG

dot-bracket secondary structure
(.((((((.((.(((.((.(((.(((((((((..........))))))))).))).)).))).))))))..)).).


SIMILARITIES
miRBase bmo-mir-306a: 8e-38

PMRD no hits

microPC no hits
UniProt no hits

RFAM no hits

Identical with: bmo-mir-306a from miRBase (MNEST035562)

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
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deep sequencing data evidence

references

[1] Liu S, Li D, Li Q, Zhao P, Xiang Z, Xia Q, BMC Genomics. 11:148(2010)., "MicroRNAs of Bombyx mori identified by Solexa sequencing"




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