miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Bicyclus anynana, Bombyx mori, Spodoptera frugiperda, Heliothis virescens, Antheraea assama, Spodoptera littoralis, Samia cynthia ricini, Danaus plexippus, Papilio xuthus, Ostrinia nubilalis, Trichoplusia ni



ABOUT THIS RECORD

ID: MNEST035581
species: Bombyx mori
source: miRBase, original name: bmo-mir-1000 (MI0013533)

Taxonomy by NCBI:
Bombyx mori Bombyx Bombycinae Bombycidae Bombyciformes Bombycoidea Obtectomera Ditrysia Heteroneura Neolepidoptera Glossata Lepidoptera Amphiesmenoptera Endopterygota Neoptera Pterygota Dicondylia Insecta Hexapoda Pancrustacea Mandibulata Arthropoda Panarthropoda Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
ATATTGTCCTGTCACAGCAGT

miRNA*
TGCTGCGTCTGGACAAGCCGG

mismatches: 6
bulges: 0

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pre-miRNA
GGCGCGTCGCGGCCATATTGTCCTGTCACAGCAGTACTTGGAAGCTACTGCTGCGTCTGGACAAGCCGGCCGCGGCGCCGCC

dot-bracket secondary structure
((((((((((((((...((((((.(.(.((((((((((....)).)))))))).).).))))))...)))))))))).))))


SIMILARITIES
miRBase aga-mir-1000: 0.0000002

PMRD no hits

microPC no hits
UniProt no hits

RFAM no hits

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: RTPCR, SOLID

references

[1] Cai Y, Yu X, Zhou Q, Yu C, Hu H, Liu J, Lin H, Yang J, Zhang B, Cui P, Hu S, Yu J, Funct Integr Genomics. 10:405-415(2010)., "Novel microRNAs in silkworm (Bombyx mori)"
[2] Huang Y, Zou Q, Tang SM, Wang LG, Shen XJ, Mol Biol Rep. 37:3171-3176(2010)., "Computational identification and characteristics of novel microRNAs from the silkworm (Bombyx mori L.)"




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