miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Bicyclus anynana, Bombyx mori, Spodoptera frugiperda, Heliothis virescens, Antheraea assama, Spodoptera littoralis, Samia cynthia ricini, Danaus plexippus, Papilio xuthus, Ostrinia nubilalis, Trichoplusia ni



ABOUT THIS RECORD

ID: MNEST035595
species: Bombyx mori
miRNA family: mir-2733
source: miRBase, original name: bmo-mir-2733b-2 (MI0014413)

Taxonomy by NCBI:
Bombyx mori Bombyx Bombycinae Bombycidae Bombyciformes Bombycoidea Obtectomera Ditrysia Heteroneura Neolepidoptera Glossata Lepidoptera Amphiesmenoptera Endopterygota Neoptera Pterygota Dicondylia Insecta Hexapoda Pancrustacea Mandibulata Arthropoda Panarthropoda Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TCACTGGGTGCGTGATGATTGT

miRNA*
AGTCATCATACTCACAGTTGATA

mismatches: 4
bulges: 1

View larger
pre-miRNA
TAACATTCTATCACTGGGTGCGTGATGATTGTGGTAGAGATTTTCACATAACGCCACCATCACATGTGACATCTCTCCTGTCTCTCTGTAATGCAGTCAT
CATACTCACAGTTGATA
TGTTTGACATTC


dot-bracket secondary structure
...((..(((((((((.(.(..((((((((((((.((((((..((((((..............)))))).))))))))..............))))))))
))..).).))).)))))
.)..))......



SIMILARITIES
miRBase bmo-mir-2733a-3: 1e-22

PMRD no hits

microPC no hits
UniProt no hits

RFAM no hits

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: SOLID

references

[1] Cai Y, Yu X, Zhou Q, Yu C, Hu H, Liu J, Lin H, Yang J, Zhang B, Cui P, Hu S, Yu J, Funct Integr Genomics. 10:405-415(2010)., "Novel microRNAs in silkworm (Bombyx mori)"




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