ABOUT THIS RECORDspecies: Fraxinus excelsior
miRNA family: MIR168
source: miRNEST
Taxonomy by NCBI:
Fraxinus excelsior Fraxinus Oleeae Oleaceae Lamiales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCGCTTGGTGCAGGTCGGGAA miRNA* CCCGCCTTGCATCAACTGAAT mismatches: 2 bulges: 0 |
pre-miRNA
GCGGCAGTCTCTAATTCGCTTGGTGCAGGTCGGGAATCAGCTTCCTCGTACTTAAATTATACGTATATATAACTATAATCTGTTTAAGCGAGAATTAGGT
TCCCGCCTTGCATCAACTGAATCGGAGACCGCGG
dot-bracket secondary structure
((((...(((((.(((((.((((((((((.((((((((......(((((..((((((......((((......))))....))))))))))).....)))
))))).)))))))))).))))).)))))))))..
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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GCGGCAGTCTCTAATTCGCTTGGTGCAGGTCGGGAATCAGCTTCCTCGTACTTAAATTATACGTATATATAACTATAATCTGTTTAAGCGAGAATTAGGT
TCCCGCCTTGCATCAACTGAATCGGAGACCGCGG
dot-bracket secondary structure
((((...(((((.(((((.((((((((((.((((((((......(((((..((((((......((((......))))....))))))))))).....)))
))))).)))))))))).))))).)))))))))..
SIMILARITIES| miRBase tcc-MIR168: 0.000000000002 PMRD rco-miR168: 0.0000000001 microPC miR168: 0.0001 | UniProt no hits RFAM MIR168: 0.00000000003 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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