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Species belonging to selected taxon:
Oryza sativa
ABOUT THIS RECORD
ID:
MNEST000941
species:
Oryza sativa
miRNA family:
MIRf75
source:
miRNEST
Taxonomy by NCBI:
Oryza sativa
Oryza
Oryzeae
Ehrhartoideae
BEP clade
Poaceae
Poales
commelinids
Liliopsida
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
GCCGAGACGAATCTTTTGACC
miRNA*
TATTAGGATTAGTTTTGTGTAA
mismatches:
4
bulges:
1
View larger
pre-miRNA
TCCAAATT
GCCGAGACGAATCTTTTGACC
CTAATTACNCCATGATTTTACCATATGATGCTACAGTAAACACTTTGCTAATAACAGATTAATTAGGCTTA
ATAAATTTATCTCGTAGTTTCCTGGCAGAATCTGTAATTTGTTTTATTATTGGACTACGTTTAATTCCTTCAAATGTGTGTTCATATACTTCNAAATTTT
TACACCTAAACAACTAAACNCGGCCATAATAGTTATATAACTAATATAAATCTTTTTTTTCGGAAGCTTAAAGTAACTATAGGAATCGAAGTAAAAAAAG
CTTGAGATGGAAATGACCNAACAAACCACATGCACCAGAAAAAAGGAAAAATAGAAGGG
TATTAGGATTAGTTTTGTGTAA
ATGGA
dot-bracket secondary structure
((((..((
((((((((.((((((...(((
((((((((.....((((((.(((...((.(((((((((((...))))))......((((.((((.......
...)))).)))).))))).)).))).)))))).))))))(((((((((((.((.((..(((((.((.........(((((....................
)))))......)).)))))..)))))))))).((((((.....)))))).(((((((((((..((((((......(((...........))).....)))
)))..))(((..(((.............)))...))).))))))))).)))))..))))
)...)))))).)))))).))))
.))))
SIMILARITIES
miRBase
osa-MIR2124a
:
5e-37
PMRD
osa-miR442
:
7e-27
microPC
no hits
UniProt
no hits
RFAM
no hits
most similar mature miRNAs
MORE
miRNEST target predictions
non-miRNEST targets: none
Source sequences
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