ABOUT THIS RECORDspecies: Sorghum bicolor
miRNA family: MIRf10
source: miRNEST
Taxonomy by NCBI:
Sorghum bicolor Sorghum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCTTAAAAGATTCGTCTCGCG miRNA* CAAGATAAATTTATTAAGCAT mismatches: 4 bulges: 0 |
pre-miRNA
CATCAGGAAACTGCAAGATAAATTTATTAAGCATAATTAATCTATCATTAGCATATATGGGTTACTGTAGCACTTAAGGCTAATCATGGAGGAACTAGTC
TTAAAAGATTCGTCTCGCGATTCTCAACT
dot-bracket secondary structure
.....((((..(((.((((.(((((.(((((..((.((..(((((.((((((......((((((...)))).))....)))))).)))))..)).))..)
)))).))))).)))).))).)))).....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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CATCAGGAAACTGCAAGATAAATTTATTAAGCATAATTAATCTATCATTAGCATATATGGGTTACTGTAGCACTTAAGGCTAATCATGGAGGAACTAGTC
TTAAAAGATTCGTCTCGCGATTCTCAACT
dot-bracket secondary structure
.....((((..(((.((((.(((((.(((((..((.((..(((((.((((((......((((((...)))).))....)))))).)))))..)).))..)
)))).))))).)))).))).)))).....
SIMILARITIES| miRBase osa-MIR2124c: 0.0000000004 PMRD osa-miRf10437-akr: 5e-19 microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
