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Species belonging to selected taxon:
Panicum virgatum
,
Cenchrus ciliaris
ABOUT THIS RECORD
ID:
MNEST001792
species:
Panicum virgatum
miRNA family:
MIR160
source:
miRNEST
Taxonomy by NCBI:
Panicum virgatum
Panicum
Paniceae
Panicoideae
PACCAD clade
Poaceae
Poales
commelinids
Liliopsida
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TGCCTGGCTCCCTGTATGCCA
miRNA*
GCGTGCAAGGAGCCAAGCATG
mismatches:
2
bulges:
0
View larger
pre-miRNA
TAGCTCGTGTG
TGCCTGGCTCCCTGTATGCCA
CACATGTAGCCCAACCCGTGGCGCGATTGGATGCTGTGGGTG
GCGTGCAAGGAGCCAAGCATG
CAGAA
CAG
dot-bracket secondary structure
.......((((
(((.(((((((.(((((((((
(...((((((((((..(((...))).))))..)))))).)))
))))))).))))))).)))))
))...
...
SIMILARITIES
miRBase
zma-MIR160b
:
8e-42
PMRD
zma-miR160b
:
8e-42
microPC
miR160
:
2e-24
UniProt
no hits
RFAM
mir-160: 2e-36
most similar mature miRNAs
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
Source sequences
download this record