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Species belonging to selected taxon:

Panicum virgatum, Saccharum hybrid cultivar CoS 767, Saccharum hybrid cultivar SP70-1143, Saccharum officinarum, Sorghum propinquum, Cenchrus ciliaris, Zea mays, Sorghum bicolor



ABOUT THIS RECORD

ID: MNEST001795
species: Panicum virgatum
miRNA family: MIR399
source: miRNEST

Taxonomy by NCBI:
Panicum virgatum Panicum Paniceae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TGCCAAAGGAGATTTGCCCGG

miRNA*
GGGCAACACTCCGTTGGCAGG

mismatches: 4
bulges: 0

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pre-miRNA
GTGATTGTGGAGGTCCATTGCAGGGCAACACTCCGTTGGCAGGTGCTACGCAAACCGGCCCTGCCGCCGGTCACCTGCCAAAGGAGATTTGCCCGGCGAT
GCGCCTGCACTGCTT


dot-bracket secondary structure
......(((.((((.((((((.((((((..((((.((((((((((........((((((......)))))))))))))))).))))..)))))).)))))
).)))).))).....



SIMILARITIES
miRBase rco-MIR399c: 0.0000004

PMRD vvi-miR399e: 0.000006

microPC miR399: 3e-35
UniProt no hits

RFAM mir-399: 0.0000000004
most similar mature miRNAs

Identical with: miR399 from microPC (MNEST045886)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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