miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Panicum virgatum, Saccharum hybrid cultivar CoS 767, Saccharum hybrid cultivar SP70-1143, Saccharum officinarum, Sorghum propinquum, Cenchrus ciliaris, Zea mays, Sorghum bicolor



ABOUT THIS RECORD

ID: MNEST001798
species: Panicum virgatum
miRNA family: MIR2504
source: miRNEST

Taxonomy by NCBI:
Panicum virgatum Panicum Paniceae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TTGACCAAGTTTATAGAAAAA

miRNA*
 TTTCTATAAACTTTGTCAAAT

mismatches: 2
bulges: 0
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pre-miRNA
 GAGATTGTTTTAGCTTTGTCCTAAGTCAAACTTCTTTAGCTTTGACCAAGTTTATAGAAAAATACATATATATCTTCAATATCAAACTAGTTTCAGTAGA
TAGACCCATGAAATATATTTTCATGGTGGCATTATATTTGATATTTTAGGTGTTAATATATTTTCTATAAACTTTGTCAAATTTAGACATGTTTGACTTG
GACAAAGCTAATACAACCCC

dot-bracket secondary structure
....((((.((((((((((((.(((((((((...(((((.((((((.((((((((((((((.((.((..((((((..(((((((((.((((.(((.....
.....((((((((.....))))))))))).))))..)))))))))..))))))..)).)))))))))))))))).)))))).)))))...))))))))))
))))))))))).))))....


SIMILARITIES
miRBase osa-MIR437: 1e-17

PMRD osa-miR437: 1e-17

microPC miR437: 0.0000002		UniProt no hits

RFAM no hits		most similar mature miRNAs

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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