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Species belonging to selected taxon:

Panicum virgatum, Saccharum hybrid cultivar CoS 767, Saccharum hybrid cultivar SP70-1143, Saccharum officinarum, Sorghum propinquum, Cenchrus ciliaris, Zea mays, Sorghum bicolor



ABOUT THIS RECORD

ID: MNEST008473
species: Sorghum bicolor
miRNA family: MIR156
source: miRNEST

Taxonomy by NCBI:
Sorghum bicolor Sorghum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TGACAGAAGAGAGTGAGCACA

miRNA*
TGCTCACTTCTCTTTCGGTCAGC

mismatches: 2
bulges: 2

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pre-miRNA
TGAATAAGGCGCTCCTGGATGTGGAGAGGCTCTTGAGAGATTGACAGAAGAGAGTGAGCACACGGCGCGACGAACGGCATAATATGTATGTCGTCCTCGC
CGCGTGCTCACTTCTCTTTCGGTCAGCCTCTTCTGTTGATGGCTTATCTCCCATCTAGATCCGCT


dot-bracket secondary structure
.......((((...(((((((.(((((((((.(((((((.(((((.(((((((((((((((.(((((.(((((...((((...))))...)))))..)))
)).)))))))).)))))))..))))).))))).....)).))))..))))))))))))...))))



SIMILARITIES
miRBase zma-MIR156d: 5e-41

PMRD sbi-miR157: 2e-43

microPC miR156: 3e-42
UniProt no hits

RFAM mir-156: 9e-40
most similar mature miRNAs

Identical with: miR156 from microPC (MNEST046791)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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