miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Panicum virgatum, Saccharum hybrid cultivar CoS 767, Saccharum hybrid cultivar SP70-1143, Saccharum officinarum, Sorghum propinquum, Cenchrus ciliaris, Zea mays, Sorghum bicolor



ABOUT THIS RECORD

ID: MNEST008479
species: Sorghum bicolor
miRNA family: MIR437
source: miRNEST

Taxonomy by NCBI:
Sorghum bicolor Sorghum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TAAGTTAGAGAAGTTTGACTT

miRNA*
GTCAAACTTCCTAACTTTGA

mismatches: 1
bulges: 1

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pre-miRNA
GTTTTGTACTAAGTCAAACTTCCTAACTTTGACTAAGTTCATATAAATCTGCACTAATATCTGCAACATCAAATTAATTTCACTAAATCTACCATGAGGT
ATTGTATATATTAATACATTTTTTCTCGAAACTTGATCTAAGTTAGAGAAGTTTGACTTAAGATAAAG


dot-bracket secondary structure
..(((((..((((((((((((((((((((.((.((((((.....((((.((...((((((.(((((.(((...........................)))
.))))).)))))).)).))))........)))))).)).))))))).)))))))))))))..))))).



SIMILARITIES
miRBase sbi-MIR437b: 0.00000000004

PMRD sof-miR437: 0.000000000009

microPC miR437: 5e-81
UniProt no hits

RFAM no hits
most similar mature miRNAs

Identical with: miR437 from microPC (MNEST045012)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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