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Species belonging to selected taxon:

Panicum virgatum



ABOUT THIS RECORD

ID: MNEST001794
species: Panicum virgatum
miRNA family: MIR399
source: miRNEST

Taxonomy by NCBI:
Panicum virgatum Panicum Paniceae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TGCCAAAGGAGATTTGCCCAG

miRNA*
GGGCCATTTCTCCTTGGGCAGA

mismatches: 4
bulges: 1

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pre-miRNA
TTGATGATTACTGGGCCATTTCTCCTTGGGCAGAGTGATCAAACCTCACATTGCTGGATCTGTTTTGCTCTGCCAAAGGAGATTTGCCCAGCGATCCACA


dot-bracket secondary structure
.....((((.((((((....(((((((.((((((((((.((..((.((...))..))...))..)))))))))).)))))))...)))))).))))....



SIMILARITIES
miRBase sbi-MIR399f: 9e-23

PMRD sbi-miR399f: 9e-23

microPC miR399: 0.000005
UniProt no hits

RFAM mir-399: 2e-21
most similar mature miRNAs

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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