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Species belonging to selected taxon:

Panicum virgatum



ABOUT THIS RECORD

ID: MNEST001808
species: Panicum virgatum
miRNA family: MIR1439
source: miRNEST

Taxonomy by NCBI:
Panicum virgatum Panicum Paniceae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TTTTGGAACGGAGGGAGTATA

miRNA*
 TACTCCCTCCGTTCCAAAATG

mismatches: 3
bulges: 0
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pre-miRNA
 CATTTACCAGCTGGCATGCTTGCTACTCCCTCCGTTCCAAAATGTAGATCGTTTTGACTTTTCTAGATTCATAGTGTTTGCTATGCATCTAGATATAACA
TATGTCTAGATACATAGCAAAATATATGAATCTAAAAAAGTCAAAACGACCTATATTTTGGAACGGAGGGAGTATATCTTATGTCACCCTTTTATG

dot-bracket secondary structure
...........(((((((.....((((((((((((((((((((((((.((((((((((((((.((((((((((...(((((((((.(((((((((((...
))))))))))).)))))))))...)))))))))).)))))))))))))).)))))))))))))))))))))))).....)))))))..........


SIMILARITIES
miRBase tae-MIR1137: 0.0002

PMRD osa-miRf11780-akr: 0.000003

microPC miR1439: 0.0000002		UniProt no hits

RFAM MIR1122: 6e-23		most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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