miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Arachis duranensis, Arachis hypogaea, Arachis ipaensis, Glycine soja, Glycyrrhiza uralensis, Lotus japonicus, Medicago sativa, Phaseolus acutifolius, Phaseolus coccineus, Pisum sativum, Trifolium pratense, Cajanus cajan, Cicer arietinum, Glycine max, Vigna unguiculata, Medicago truncatula, Phaseolus vulgaris



ABOUT THIS RECORD

ID: MNEST001423
species: Lotus japonicus
miRNA family: MIR171
source: miRNEST

Taxonomy by NCBI:
Lotus japonicus Lotus Loteae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TGAGCCGGATCAATATCACTC

miRNA*
 GTGGTATTGCTTCTGCTCATC

mismatches: 4
bulges: 0
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pre-miRNA
 AAGTAGACAAGTGTGGTATTGCTTCTGCTCATCTTAATTATTGAATAAACTATATATATTATGGCTTAAGATGAGCCGGATCAATATCACTCCCGTACAT
G

dot-bracket secondary structure
..(((.......(((((((((.(((.(((((((((((.((.((.(((.....))).)).))....))))))))))).))).))))))))).....)))..
.


SIMILARITIES
miRBase no hits

PMRD no hits

microPC miR171: 5e-40		UniProt no hits

RFAM MIR171_2: 0.0003		most similar mature miRNAs

Identical with: miR171 from microPC (MNEST045188)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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