miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Arachis duranensis, Arachis hypogaea, Arachis ipaensis, Glycine soja, Glycyrrhiza uralensis, Lotus japonicus, Medicago sativa, Phaseolus acutifolius, Phaseolus coccineus, Pisum sativum, Trifolium pratense, Cajanus cajan, Cicer arietinum, Glycine max, Vigna unguiculata, Medicago truncatula, Phaseolus vulgaris



ABOUT THIS RECORD

ID: MNEST001427
species: Lotus japonicus
miRNA family: MIRf519
source: miRNEST

Taxonomy by NCBI:
Lotus japonicus Lotus Loteae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
GTATAACATCATGAGCAATCA

miRNA*
ACTGCTCATGATGTTATATCA

mismatches: 3
bulges: 0

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pre-miRNA
ATCATGGCTGGCTTGCATACAATTTATTCAGGAATAATGAAGTATAACATCATGAGCAATCAGCCTTAATTTTTTTAGGCAGATGGACTGCTCATGATGT
TATATCA
TTTCCTTGAATTTACCTTCTGCACGCACAATATGCCAC


dot-bracket secondary structure
....((((..((.((((........(((((((...(((((..((((((((((((((((.((.((((.((....)).)))).....)).))))))))))))
)))))))
))..)))))))........)))).)).......)))).



SIMILARITIES
miRBase no hits

PMRD ath-miRf11142-akr: 0.00003

microPC no hits
UniProt no hits

RFAM no hits
most similar mature miRNAs

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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