miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Arachis duranensis, Arachis hypogaea, Arachis ipaensis, Glycine soja, Glycyrrhiza uralensis, Lotus japonicus, Medicago sativa, Phaseolus acutifolius, Phaseolus coccineus, Pisum sativum, Trifolium pratense, Cajanus cajan, Cicer arietinum, Glycine max, Vigna unguiculata, Medicago truncatula, Phaseolus vulgaris



ABOUT THIS RECORD

ID: MNEST001428
species: Lotus japonicus
miRNA family: MIRf375
source: miRNEST

Taxonomy by NCBI:
Lotus japonicus Lotus Loteae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
AGCAGCAGCAGCATCATCAGC

miRNA*
TGGTGAGAGCTGGTGTTGTTAG

mismatches: 4
bulges: 1

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pre-miRNA
TGGAGGAGTTCTTGGTGAGAGCTGGTGTTGTTAGAGAAGACGCGAAGAACGATGCGGTTTTCGCTGATCTGGCTCGTGCTGGGAACAATAGTGGTTTGGG
ATTTGAGTTTCAGGCTCAGCAGATGAACAGGATTGCTGGTTTGATGGGTGGTAATAATAGGATTCCTGGTGCCAGTGATGATCCAATTGTGTCTCTTCAG
AATTCTACCAATTTGCCCTTGAATGCTAATGGTTTCAGATCACCAAATCAGCAACAACAGATGCAGAATTCACATCAGCAGAATCATCAGCAGCAGCAGC
ATCATCAGC
AACAACAGA


dot-bracket secondary structure
.......(((.(((((((..((((.((((((..(((.(((.(((((((.((...)).)))))))...)))..))).((((((....(((..(((((((((
(((((((..(((((((((((((((....((((((.((((......(((.....(((((.(((((((((....))).))..)))).)))))..))).))))
))))))....))))))...)))..)))..))).)))))))).))))))))(((........)))...)))....))))))((....)).)))))).))))
.))))))).
)))......



SIMILARITIES
miRBase no hits

PMRD no hits

microPC no hits
UniProt sp|Q9M7Q4|AI5L5_ARATH: 0.0004

RFAM no hits
most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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